Human Neocortical Neurosolver
Challenge in Human Neuroscience
Electro- and magneto-encephalography (EEG/MEG) are among the most powerful technologies to non-invasively record human brain activity with millisecond resolution. They provide reliable markers of healthy brain function and disease states. A major limitation is that it is often difficult to connect the macroscopic scale measured signals to the underlying cellular and circuit level neural generators. This difficulty limits the translation of EEG/MEG studies into novel principles of information processing, or into new treatment modalities for neural pathologies.
Solution: Human Neocortical Neurosolver
Human Neocortical Neurosolver (HNN) is a user-friendly software tool that provides a novel solution to this challenge. HNN gives researchers and clinicians the ability to test and develop hypotheses on the circuit mechanism underlying their EEG/MEG data in an easy-to-use environment. The foundation of HNN is a computational neural model that simulates the electrical activity of the neocortical cells and circuits that generate the primary electrical currents underlying EEG/MEG recordings. We provide tutorials on how to import your data and to begin to understand the underlying circuit mechanisms.
Learn about the model on the Overview and Uniqueness page
Review our step-by-step instructions on the GUI Tutorials page
Our tutorials are based on prior studies of primary somatosensory cortex and focus on simulating some of the most commonly measured EEG/MEG signals including sensory evoked response (ERPs), and low frequency alpha (10-14 Hz), beta (15-30 Hz) and gamma (30-80 Hz) rhythms (Jones et al., 2007; Jones et al., 2009; Sherman et al., 2016; Lee & Jones 2013). By learning how to simulate these basic signals, you will gain insight into how to adjust the parameters in our model for your hypothesis-testing needs.
HNN-Core 0.1 Released
We are pleased to annoice the release of HNN-Core 0.1, a a streamlined Python package with the utility of HNN + a command line interface. Click here to learn more.
Citing Our Software
Neymotin SA, Daniels DS, Caldwell B, McDougal RA, Carnevale NT, Jas M, Moore CI, Hines ML, Hämäläinen M, Jones SR. Human Neocortical Neurosolver (HNN), a new software tool for interpreting the cellular and network origin of human MEG/EEG data (2020). eLife 2020;9:e51214 DOI: 10.7554/eLife.51214 (https://doi.org/10.7554/eLife.51214)
We're Open Source!
Our software was created to be expandable and generative. While designed for use by researchers without computational neuroscience expertise, if you know a bit about computational neuroscience, we encourage you to contribute to the developments. Our software is open-source. It was created in the NEURON-Python simulation environment and designed to be flexibly expanded to include other cell types, or circuits. We have a user’s forum and online resources to answer questions and expand the utility of our tool.
Planned Software Expansions
We are planning several expansions to our code. We value the input of the user to guide our developments. Please join our user’s forum to submit your suggestions to extend HNN’s capabilities.
Get in Touch
Stephanie Jones Lab
Carney Institute for Brain Sciences
164 Angell St., Floor 4
Providence, RI 02906